Name: variant-annotation
Owner: Verily Life Sciences
Description: Use cloud technology to annotate human sequence variants in parallel.
Created: 2017-08-24 19:41:29.0
Updated: 2017-08-28 17:17:31.0
Pushed: 2017-09-05 23:50:12.0
Size: 48
Language: Jupyter Notebook
GitHub Committers
User | Most Recent Commit | # Commits |
---|
Other Committers
User | Most Recent Commit | # Commits |
---|
This is not an official Verily product.
This repository contains code to annotate human sequence variants using cloud technology to perform analyses in parallel.
Sub-projects:
The code in this repository is designed for use with genomic variants stored in Google BigQuery in a particular variant table format.
Processing uses Google Container Builder, Docker, and dsub for batch processing. We suggest working through the introductory materials for each tool before working with the code in this repository.
For interactive annotation, parallelism is accomplished due to the use of BigQuery. For batch annotation, parallelism is accomplished due to the use of dsub to run annotation in parallel on small shards of the input file(s).