CD2H gitForager

C3BI-pasteur-fr

Login: C3BI-pasteur-fr

Company: null

Location: Institut Pasteur 25-28 rue du Dr Roux 75015 Paris

email:

Blog: https://c3bi.pasteur.fr/

Members

Repositories

BeadArrayCNV: null
beamertheme: null
bioweb: null
blast2seqids: parse a blast output in ( text format -m 0 ) and return a list of hits identifier in usa format.
Cassandre: Personal database system integrating a "user-friendly" interface to manage and explore multiple sets of large-scale experimental results.
common-workflow-language: Repository for CWL Specfications
CoreGeneBuilder: CoreGeneBuilder can be used to extract a core genome or a persistent genome from a given set of bacterial genomes
CPdist: null
cwltool: Common Workflow Language reference implementation
eFASTA: eFASTA: extracting nucleotide segments from FASTA file
fastaextract: extract or exclude entries by name from fasta formatted files.
fasta-rename: Parse a file with fasta sequences. Replace the identifier of a fasta sequences by a short identifier and generate a file with renamed fasta sequences and a file of mapping.
FragmentAnalyser: null
galaxy: Data intensive science for everyone.
galaxy_base_conf: IPGalaxy basic configuration
galaxy-dist: Galaxy Pasteur instance repository
Galaxy-playbook: null
Galaxy_training_material: null
golden: index databanks and retrieve information in them.
IFB-BioShadock: host Dockerfiles for Bioshadock
IFB-playbook: store playbook to build IFB appliances
ngphylogeny-django: null
ngphylogeny-django: null
ngphylogeny-django: null
ngphylogeny-django: null
ngphylogeny-galaxy: Galaxy tools and workflows used in NGPhylogeny.fr
ngphylogeny-galaxy: Galaxy tools and workflows used in NGPhylogeny.fr
ngphylogeny-galaxy: Galaxy tools and workflows used in NGPhylogeny.fr
ngphylogeny-galaxy: Galaxy tools and workflows used in NGPhylogeny.fr
python-course-1: python course of E2I2B
python-solutions-1: solutions of the E2I2B python courses exercises
ReGaTE: Registration of Galaxy Tools in Elixir
Salmonella-CRISPR-Typing: null
sandbox: sandbox for the git tutorial
seqExclude: filter fasta sequences based on size
sig: Multiple Prosite motifs searching
taxodb_ncbi: NCBI Taxonomy Database formater
taxo_pack: Analyze and visualize the taxonomic abundance of set of sequences
taxo_rrna: Creation of taxonomy Berleley DB for Silva and Greengenes 16S databases
test: test
toil: A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
toppred: toppred :: Transmembrane topology prediction based on von Heijne, G. (1992) Membrane Protein Structure Prediction: Hydrophobicity Analysis and the 'Positive Inside' (PMID: 1593632)
training-material: A collection of training material from offered Galaxy courses
tutorials: null
unix-training: null
workflows: Community maintained workflows & tools (with examples)

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.