Clinical Informatics Research Division

Login: UTHSCSA-CIRD

Company: null

Location: San Antonio, TX

email:

Blog:

Repositories

2016-Fall-TSCI-5050
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2017-fall-TSCI-5050
TSCI 5050, Introduction to Data Science, Fall 2017
2017-Spring-TSCI-5050
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addressfix
Wrapper for a couple of address parsing/standardizing libraries for the purpose of cleaning up addresses in CSV files.
allostatic_loadtest
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chinotype
General purpose script for looking for over and under represented EHR facts in an i2b2 patient-set. Can be used for finding healthcare outcomes disparities, comorbidities, and who knows what else. The name is a portmanteau of Chi-squared and phenotype.
Cird_util_cohort_fact
Utility function for adding a cohort fact from an I2B2 Query.
cohortChar
Cohort characterization script for sites using I2B2
databuilder
UI and back end updates for CIRD data builder
databuilder_automate
Scripts to automate data builder / data finisher
datafinisher
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datafinisher_backup
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GPC-height-weight-manuscript
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GPC-Weight-Health-Survey
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grant_01_kidneycancer
Preliminary data for Ron Rodriguez et al. R21 disparities grant for Kidney Cancer
Grantformatics
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HCUP-ETL
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HIV-Simulation
HIV Transmission ABM
i2b2
Local i2b2 user community
i2b2_configs
(local) tools and templates for deploying i2b2 and SHRINE
i2p-transform
i2b2 to PCORnet Common Data Model Transformation - requires i2b2 PCORnet ontology
paper01_rai
The data analysis portion of the RAI code.
paper_falls_in_elderly
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paper_kidneycancer
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patientmatch
Machine-learning tools for using EMR data to match cases and controls.
PrelimA
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PullMatches
Java app matching algorithms
rando
Random variable generation by creating random functions in R
Rcasematch
R package of functions useful for finding a control group for a cohort of interest, particularly when analyzing retrospective EHR data
simSQL
Script for populating a database with simulated data based on table definitions (and eventually custom datatypes specified in config files).
TABSIE
Table Ananlyzer, Browser, and Summarizer for Informatics Exploration
TDG
Tabsie Data Generator
TSCI-5050
Course: TSCI 5050, Introduction to Data Science
This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.