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BPA and CSIRO Workshops

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bpa-csiro-workshops.github.io: bpa-csiro-workshops.github.io
btp-catalogue: A catalogue of hands-on bioinformatic workshops.
btp-handout-style: A LaTeX style file for use with workshop handouts
btp-manuals-md: This contains all material for Markdown version of BTP workshops
btp-module-chip-seq: Bioinformatics Training Platform (BTP) Module: ChIP-Seq
btp-module-denovo-canu: de novo assembly section - PacBio + Illumina read using the canu workflow
btp-module-intro-ngs-presentations: Introduction to NGS presentations
btp-module-mgn-qc: btp-module-mgn-qc
btp-module-nectar: Bioinformatics Training Platform (BTP) Module: Using the NeCTAR Research Cloud
btp-module-ngs-bio: btp-module-ngs-bio
btp-module-ngs-cli: btp-module-ngs-cli
btp-module-ngs-mapping: Bioinformatics Training Platform (BTP) Module: NGS read mapping with Bowtie2
btp-module-ngs-qc: Bioinformatics Training Platform (BTP) Module: NGS Quality Control
btp-module-rna-seq: Bioinformatics Training Platform (BTP) Module: RNA-Seq
btp-module-template: Bioinformatics Training Platform (BTP) Module: Template
btp-module-template-md: This is the Markdown template for BTP modules
btp-module-velvet: Bioinformatics Training Platform (BTP) Module: Velvet for de novo assembly
btp-orchestration: Orchestration templates for creation of BTP images and instantiation of BTP instances on various platforms.
btp-orchestration-metagenomics: btp-orchestration-metagenomics
btp-orchestration-ngs: btp-orchestration-ngs
btp-tools: Analysis tools installers and fpm-cookery recipes for building .deb packages for the Bioinformatics Training Platform
btp-workshop-cancer: btp-workshop-cancer
btp-workshop-denovo: btp-workshop-denovo
btp-workshop-metagenomics: btp-workshop-metagenomics
btp-workshop-mgn: null
btp-workshop-ngs: Bioinformatics Training Platform (BTP) Workshop: Introduction to NGS
btp-workshop-template: Bioinformatics Training Platform (BTP) Workshop: Template
cancer-manuals: null
cancer-module-alignment: cancer-module-alignment
cancer-module-cnv: cancer-module-cnv
cancer-module-snv: cancer-module-snv
cancer-module-somatic: cancer-module-somatic
cancer-module-sv: cancer-module-sv
cancer-module-viz: cancer-module-viz
denovo-module-bac: denovo-module-bac
denovo-module-cli: denovo-module-cli
denovo-module-euk: denovo-module-euk
denovo-module-scaffolding: denovo-module-scaffolding
handout-template: Template files for creating a LaTeX-based handout document for hands-on training workshops
intro-ngs-manuals: Introduction to NGS Data Analysis: 27th - 29th June 2017, University of Sydney
metagenomics-handout: null
metagenomics-manuals: null
metagenomics-module-fda: Bioinformatics Training Platform (BTP) workshop: metagenomics functional data analysis module
metagenomics-module-qc: metagenomics-module-qc
metagenomics-module-tax: Bioinformatics Training Platform (BTP) Workshop: metagenomics taxonomic module
metagenomics-module-vis: Bioinformatics Training Platform (BTP) workshop: metagenomics visualisation module
metagenomics-module-wga: Bioinformatics Training Platform (BTP) Workshop: metagenomics whole genome assembly module
Trainer-information: Tips and tricks for trainers and workshop hosts. Includes SOP for hosting a workshop.

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.