Bionformatics Netherlands

Login: Bioinformaticsnl

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Location: Wageningen, Netherlands

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Members

  1. Saulo

Repositories

A50-plot
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allbiotc2
Benchmark pipeline for Structural Variation analyses, funded by the ALLBio
Apollo
Genome annotation editor, with a Java servlet backend and a Javascript client that runs in a web browser as a JBrowse plugin
bcbb
Incubator for useful bioinformatics code, primarily in Python and R
cufflinksviewer
cuff links viewer
d3
A JavaScript visualization library for HTML and SVG.
docker
Docker - the open-source application container engine
enter
Add a bug report to ask to join the group
impress.js
It's a presentation framework based on the power of CSS3 transforms and transitions in modern browsers and inspired by the idea behind prezi.com.
jbrowse
A modern genome browser built with JavaScript and HTML5.
Jellyfish
A fast multi-threaded k-mer counter
ldapauthenticator
LDAP Authenticator Plugin for Jupyter
learn.jquery.com
jQuery Learning Center web site content
qrqc
Quick Read Quality Control
samtools
This is the official development repository for samtools.
scythe
A 3'-end adapter contaminant trimmer
sga
de novo sequence assembler using string graphs
SimSeq
An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina data as possible. Some of these quirks include the potential for chimeric reads, and non-biotinylated fragment pull down in mate-pair libraries . Additionally the program provides the ability to model both site and base specific error, and scripts are provided to train this error model on real datasets. My hope in creating this program is to generate as realistic data as possible to assist in assessing the accuracy of genome assembly tools.
Snap.svg
The JavaScript library for modern SVG graphics.
snpr
The sources of the openSNP website
sql.js
SQLite compiled to JavaScript through Emscripten
viz.js
A hack to put GraphViz on the web.
webmummer
Web Browser Mummer Plot Viewer
This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.