CyVerse Archived Repositories

Login: cyverse-archive

Company: null

Location: null

email: cyverse-archive-gh@cyverse.org

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Members

1. Paul Sarando

Repositories

ansible

null

ansible-elasticsearch

Ansible playbook for Elasticsearch

belphegor

Admin interface for the iPlant Discovery Environment.

boxy

a mock of an iRODS repository to be used with clj-jargon

broadcasters

iPlant Viewer-Editor integration framework

buggalo

Command-line tool for extracting phylogenetic trees from tree files.

Clavin

Command-line utility to load .properties files into Zookeeper.

clavin-java

A Clavin client library for applications written in Java.

clj-cas

A CAS Client library written in Clojure.

clj-icat-direct

Clojure library for running queries directly against the iRODS ICAT database.

clj-jargon

Clojure API on top of iRODS's jargon-core

clockwork

Scheduled jobs for the iPlant Discovery Environment

Conrad

null

DE

The CyVerse Discovery Environment

de-ansible

null

de-authn

Authentication module for the Discovery Environment

de-base-services-pom

A Maven POM project for base services used by the Discovery Environment backend.

de-business

Business layer for Discovery Environment services backend.

de-common-module

Discovery Environment common Java-based web application infrastructure

de-database-schema

Underlying Discovery Environment database schema.

de-files

File-related services for the Discovery Environment backend.

de-jetty

Packages the iPlant Discovery Environment in an RPM to be launched in a dedicated Jetty instance.

deliminator

A Clojure library for parsing excerpts from CSV files.

de-persistence

Persistence library for interacting with relation data used by the Discovery Environment

de-webapp

The Discovery Environment web application that provides the user interface for the overall Discovery Environment distributed system.

dewey

A message based iRODS indexer for elasticsearch.

dingle

null

DiscoveryEnvironment

Web portal for the iPlant Life Sciences Cyberinfrastructure

DiscoveryEnvironmentBackend

All of the backend code for the Discovery Environment in a single repository.

Donkey

Backend for the Discovery Environment.

esp-common

Common namespaces for the event stream processor.

esp-database

SQL scripts for creating the ESP databse.

esp-http

HTTP JSON API for the ESP project.

facepalm

Database migration and management tool.

filetool

Command-line utility used in the Discovery Environment that transfers files into an iRODS installation.

fleet

Templating System for Clojure

heuristomancer

null

hibernatetoolkit

A common toolkit for using Hibernate ORM.

hoot

null

Infosquito

service for indexing iPlant Collaborative user content

iplant-buggalo

The interface between the tree viewer service and the discovery environment.

iplant-clavin

Clavin Client for Perl Modules

iplant-clojure-commons

Clojure code that is useful across multiple iPlant services.

iplant-email

Backend service that allows other backend services to send emails to users.

iplant-monitor

Service used to monitor condor jobs on a condor cluster.

jetty-launcher

A GWT Jetty launcher that uses Jetty 8.1.7.

JEX

This service accepts analysis submissions in the form of JSON submitted by the Discovery Environment and turns it into Condor DAG and job submission files.

JSON-java

A reference implementation of a JSON package in Java.

jsonutil-module

GWT module of utilities for handling JSON data.

kameleon

Database library that uses Korma to provide access and utilities to the DE's backend databases.

kifshare

App that handles downloading files from iRODS when given a ticket.

klutz

Builds and packages the Discovery Environment.

lein-iplant-cmdtar

Leiningen plugin for generating tarball distributions for command-line utilities written in Clojure

lein-iplant-rpm

Leiningen plugin to generate RPM files for iPlant Clojure projects.

lein-sonatype-deploy

A Leiningen plugin for deploying face source and javadoc jar files.

mescal

Clojure client for the Agave API.

metadactyl

An evolving metadata format processing library.

metadactyl-clj

A mule-replacement interface to the Metadactyl services, written in clojure.

morbixon

Logging service and provenance facade for the iPlant Discovery Environment.

Nibblonian

Service that provides an HTTP JSON API for common iRODS operations.

NotificationAgent

Accepts callback notifications from the OSM about job status changes and provides an endpoint for the Discovery Environment that is used to look up the states of a user's analyses.

notification-db

null

OSM

Thin HTTP layer on top of MongoDB that allows a subset of MongoDB's operation. Also provides HTTP callbacks.

Panopticon

Basic job monitor for Condor

parsely

null

proboscis

Utility to create an ElasticSearch index and mappings for Infosquito.

prov-proxy

prov-proxy

Scruffian

Download/Upload REST-like API for iRODS

Stubby

Stubbed out version of an internal API. Used for development purposes.

Tito

Discovery Envrionment Tool Integration web application.

ui-applications-module

GWT module for UI components associated with the "Apps" abstraction.

ui-apps-integration

User interface support for creating and integrating DE Apps

ui-apps-widgets-module

Discovery Environment specific shared user interface widgets.

ui-commons-module

GWT module of common UI components utilized across of iPlant GWT applications

ui-disk-resource-module

GWT module for UI components associated with the "Data" window abstraction.

ui-metadata-module

GWT module for UI components associated with metadata-driven widgets.

ui-pipeline-builder-module

A GWT Module for graphically creating a simple pipeline within the Discovery Environment

ui-pipelines-module

GWT module for UI components associated with the "Automated Workflow" abstraction.

ui-resources-module

a gwt module for all ui related resources such as messages, images etc...

vagrant-dingle

null

zoidberg

This project is the backend for the tool integration tool (Tito). It allows the front-end to interact with both the Object State Management (OSM) and the Discovery Environment through a single service.