National Evolutionary Synthesis Center

Login: NESCent

Company: null

Location: Durham, NC

email: informatics@nescent.org

Blog: http://nescent.org

Members

1. Dan Leehr
2. Hilmar Lapp
3. Jim Balhoff
4. Karen Cranston

Repositories

1000-datasets

Tracking reuse of 1,000 publicly available scientific datasets across 10 repositories. Work in progress!

2014-05-08-datacarpentry

Website for the May 8-9, 2014, Data Carpentry workshop at NESCent.

angular-hackday

AngularJS prototype of author editor for Dryad submission,

Chimp-Recs-FieldObservations

Scripts, code, and metadata for archiving and metadata extraction for F. Plooij's chimp audio recordings

community-and-code

Supplementary data for "Community and Code: Nine Lessons from Nine NESCent Hackathons"

dataone-ws-tester

(Outdated) system to test the web-services API of a DataONE Member Node (MN)

dbhack1

Automatically exported from code.google.com/p/dbhack1

diversification

Design and implementation of methods to estimate speciation and extinction rates that may depend on a character state.

dplace

D-PLACE: Database of Phylogenies of Languages for the study of Cultural Evolution

DQ

Calculates multi-locus (including pairwise) linkage and identity disequilibria for SNP Haplotype datasets.

evogen

Phylogenetic tree rendering as a web-service. Demonstration project for the EvoGenomics WG at NESCent.

evolution-2014

Tools, scripts, and other handy things for running and managing the 2014 Evolution Conference.

fcdb-api

JSON/REST API for FossilCalibrations

feedexp.org

Static tombstone page with data archive links and information about the Feeding Experiments End-user Database (FEED)

feedingdb

Feeding Experiments End-user Database (FEED)

feed-ontology-closure

Tool for asserting transitive closure axioms, used by the FEED project.

FossilCalibrations

Fossil calibrations database

GitHackDay

Used for the Informatics Hackday devoted to git and Github.

heliconius-db

Database schema and web-application for natural diversity of phenotypes and genotypes collected for the neotropical Heliconius butterflies

hip_hack_howto

Hackathon guidance from NESCent's Hackathons, Interoperability, Phylogenies working group.

ievobio

The iEvoBio website. This is mostly an archive of past websites, but can also be used for future websites.

max-bodysize-evol

The codebase for the Maximum Bodysize Evolution Database developed by the Working Group "Phanerozoic body size trends in time and space: macroevolution and macroecology"

MINOTAUR

Multivariate vIsualisatioN and OuTlier Analysis Using R

motmot

models of trait macroevolution on trees. R code.

mr-naims

A simple name cleaner

mx

The Rails 3 fork of mx

nescent-data

Data, analyses, and visualizations for, about, and from NESCent activities.

nescent.github.io

Public site for NESCent digital asset archival

ontologies-in-evobio-course-2012

Ontologies for Evolutionary Biology course held in 2012

ontologies-in-evobio-course-2013

Ontologies for Evolutionary Biology course held in 2013

openid_consumer_example

A simple Rails OpenID Consumer, using ruby-openid

ParkNotebooks

Scripts for digitization and curation of the Park Notebooks

phylocommons

A Django web app over an RDF phylogeny database supporting tree annotation and querying.

phyloMeta

phyloMeta is a program for phylogenetic comparative analyses with meta-analysis.

Phylontal

Phylontal is a tool for aligning mulitiple species-specific ontologies in a phylogenetically aware manner. It was started during a NESCent sponsored short term visit.

phylosoc2007jestill

Command Line Interface to a Topological Query Application for BioSQL - A 2007 Google Summer of Code project

phylowood

Browser-based Interactive Phylogeographic Animations

phylr

An initial implementation of the search functionality described in the PhyloWS standard for accessing phylogenetic information. A 2009 Google Summer of Code project.

plhdb

Primate Life Histories Database Codebase

pmdb

Code for the Plant Mating Systems Evolution Database

popgen-docker

Dockerfile(s) for population genetics

popgenInfo

Vignettes for Population Genetics in R

RMesquite

An package for interoperability between Mesquite (http://mesquiteproject.org) and R

r-popgen-hackathon

Population Genetics Hackathon, to be held at NESCent on March 16-20, 2015

snape

Single Node Age Prior Estimation (SNAPE) is designed to calculate informative divergence time priors based on a relatively complete assessment of the fossil record of a single clade.

Taxonomy-Ontology-Tool

Tool for constructing taxonomic ontologies from different authoritative sources for hierarchy, currently valid names, and synonyms.

Tools-for-Evo-Hack

GMOD Tools for Evolutionary Biology Hackathon

TraitDB

Trait Database using Rails 4

VisualWG-TableMerge

Spreadsheet merging script for Evolution of the Vertebrate Visual System working group.