nf-core

Login: nf-core

Company: null

Location: null

email: phil.ewels@scilifelab.se

Blog: http://nf-co.re

Members

  1. Alexander Peltzer
  2. Hadrien Gourlé
  3. Maxime Garcia
  4. Phil Ewels
  5. Tiffany Delhomme

Repositories

chipseq
Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.
cookiecutter
Template for your own top-end Nextflow pipeline, customised using Cookiecutter
exoseq
Exome Sequencing analysis pipeline (Work in progress)
logos
contains logos for nf-core
mag
UNDER CONSTRUCTION: Assembly, binning and annotation of metagenomes.
methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
nf-co.re
Files for the main nf-core website >>>
nf-core.github.io
Documentation website for the nf-core community
cookiecutter
Template for your own top-end Nextflow pipeline, customised using Cookiecutter
rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
test-datasets
Test data to be used for automated testing with the nf-core pipelines
tools
Python package with helper tools for the nf-core community.
vipr
Assembly and intrahost / low-frequency variant calling for viral samples
This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.