CD2H gitForager

Generic Model Organism Database Project

Login: GMOD

Company: null

Location: null

email: null

Blog: http://gmod.org

Members

Repositories

Apollo: Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
Bio-Chado-Schema: Perl modules for working with a Chado schema
Bio-GMOD-Blast-Graph: display a graphical summary of a BLAST report
Bio-Graphics: Generate GD images of biological sequences and annotations
Chado: the GMOD database schema
cmap: A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species.
coordinate-transform: Coordinate transformation library used by Apollo.
docker-apollo: :whale: Apollo 2.X Docker Image
docker-compose-galaxy-annotation: :whale::bar_chart::books: Galaxy + Apollo + JBrowse as a docker-compose.yml
GBrowse: the Generic Genome Browser
GBrowse-Adaptors: null
gbrowse_to_jbrowse: Tools for migrating from GBrowse to JBrowse.
GenomeFeatureComponent: Provides SVG View for Genome Features rendered with the Apollo Track Web Service from JBrowse data React Component
genome-projection: Genome projection library
gff3_validator: Online and command-line GFF3 validator
gff-js: parse and format streams of GFF3, for node or webpack
GMOD-RPC-perl: Perl libraries for implementing GMOD-RPC
gmod_svn_migration: Scripts and data used to migrate GMOD projects from svn on SourceForge to git on GitHub
gmod-web: Issues with or about, and tools for the GMOD website (currently a wiki)
jbconnect: JBConnect, an optional server-side component of JBrowse (Not yet released)
jbconnect-hook-jblast: JBrowse/Galaxy-Blast Plugin (Work-in-progress)
jbconnect-hook-jblast: JBrowse/Galaxy-Blast Plugin (Work-in-progress)
jbconnect-hook-jblast: JBrowse/Galaxy-Blast Plugin (Work-in-progress)
jbconnect-hook-jblast: JBrowse/Galaxy-Blast Plugin (Work-in-progress)
jbrowse: A modern genome browser built with JavaScript and HTML5.
jbrowse_analytics: nodejs-based server for handling usage reports coming in from JBrowse instances
jbrowse-docker: JBrowse docker project
jbrowse-registry: JBrowse Plugin Registry
jbrowse_syn: AJAX Genome Browser
linear-projection: null
mimosa: Miniature Model Organism Sequence Aligner
myvariantviewer: A JBrowse plugin for viewing info from myvariant.info
ProcessCite: A semantic, impact-storified version of the ProcessCite mediawiki extension.
python-apollo: Python library for talking to Apollo API
WebGBrowse: a web interface for setting up GBrowse instances

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.