CD2H gitForager

BC Cancer Agency Canada's Michael Smith Genome Sciences Centre

Login: bcgsc

Company: null

Location: Vancouver, BC, Canada

email: benv@bcgsc.ca

Blog: http://www.bcgsc.ca/

Members

Repositories

chromeqc: ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
abyss: :microscope: Assemble large genomes using short reads
abyss-2.0-giab: :baby_bottle: Assemble the Genome in a Bottle sequencing data
arcs: Scaffold genome sequence assemblies using 10x Genomics data
arks: Scaffold genome assemblies with 10x Genomics Chromium reads
biobloom: Create Bloom filters for a given reference and then to categorize sequences
bloom-identity-est: These scripts provide a fast, memory-efficient method for estimating the percent sequence identity between two genomes using a probabilistic data structure called a Bloom filter
btl: :microscope: Bioinformatics Technology Lab of the Genome Sciences Centre
btl_bloomfilter: The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.
cghub-manifest-summary: null
ChopStitch: Finding putative exons and constructing splicegraphs using Trans-ABySS contigs
ChopStitch_paper: Supplementary material for ChopStitch paper
chromeqc: ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
dida: DIDA Project
ggcli: command line interface for ggplot
gtf_verification: Compare a few GTF files and see how different they are
gum: GUM: Group, User Manager for LDAP
homebrew-core: :beers::penguin: Core formulae for the Linuxbrew package manager
kollector: de novo targeted gene assembly
konnector2-paper: Evaluation work for the Konnector 2 paper
LINKS: Long Interval Nucleotide K-mer Scaffolder
mavis: Merging, Annotation, Validation, and Illustration of Structural variants
mirna: microRNA profiling pipeline
NanoSim: Nanopore sequence read simulator
ntCard: Estimating k-mer coverage histogram of genomics data
ntHash: ntHash: recursive nucleotide hashing
orca: :whale: Genomics Research Container Architecture
pavfinder: Post Assembly Variants Finder
pavfinder_transcriptome: null
ProbeGenerator: Determine the nucleotide sequences of mutations
RAILS: RAILS v1.1 and Cobbler v0.2
rsempipeline: A pipeline for running rsem analysis on thousands of samples
rsemreport: A Django site for reporting the progress of rsempipeline analysis
tasrkleat: null
tasrkleat-TCGA-analysis-scripts: This repo stores codes for the analysis of tasrkleat results on TCGA RNA-Seq dataa
tigmint: ? Correct misassemblies using linked reads
transabyss: de novo assembly of RNA-Seq data using ABySS.
trim-from-alignments: Trims scaffolds based on alignments
utrtargets: Targets generation for TASRKleat
xmatchview: smith-waterman alignment visualization
xmatchview: smith-waterman alignment visualization

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.