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BIDS Apps

Login: BIDS-Apps

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Blog: http://bids-apps.neuroimaging.io

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Repositories

aa: BIDS App containing an instance of the Automatic Analysis
afni_proc: null
antsCorticalThickness: BIDS App for calculating cortical thickness using ANTs
baracus: null
base_fsl: null
base_validator: null
bids-apps.github.io: null
bidscmd: BIDS Apps compatible ArgParse
brainiak-srm: This is the BIDS-app version of the Shared Response Model (SRM) of BrainIAK
BRAINSAutoworkup: null
BrainSuite: null
BROCCOLI: BIDS App for BROCCOLI
CPAC: BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)
dockerfile-templates: Dockerfile templates commonly used in BIDS Apps
DPARSF: Docker version of DPARSF, also deployed at OpenNeuro.org
example: This an example app that can serve as a template.
FibreDensityAndCrosssection: null
fmriprep: This repository has moved to https://github.com/poldracklab/fmriprep
freesurfer: recon-all from FreeSurfer
HCPPipelines: null
hyperalignment: null
MAGeTbrain: null
matlab-compiler-runtime: Base image with Matlab Compiler Runtime (MCR)
mindboggle: null
mriqc: This repository has moved to https://github.com/poldracklab/mriqc
MRtrix3_connectome: Generate subject connectomes from raw image data and perform inter-subject connection density normalisation, using tools provided in the *MRtrix3* software package.
ndmg: BIDS app for NeuroData's MRI to Graphs pipeline
neuroscout: null
niak: Pipeline for preprocessing of fMRI and structural MRI scans http://niak.simexp-lab.org/
nipypelines: null
oppni: null
Q: definition of structure for Q
QAP: PCP Quality Assessment Protocol
randomise: Group level random effects analysis using FSLs randomise
rsHRF: null
rs_signal_extract: BIDS App for resting state signal extraction using nilearn.
SnPM: null
SPM: BIDS App containing an instance of the SPM software.
tracula: null

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.