OpenMendel

Login: OpenMendel

Company: null

Location: null

email:

Blog:

Members

1. Marc Suchard

Repositories

CodingStyle

Coding style guidelines for OpenMendel packages

MendelAimSelection.jl

This analysis option selects the SNPs that are most informative at predicting ancestry for your data ? the best Ancestry Informative Markers (AIMs).

MendelBase.jl

MendelBase contains the base functions of OpenMendel.

MendelEstimateFrequencies.jl

This analysis option calculates a likelihood-based estimate of allele frequencies.

MendelGameteCompetition.jl

This analysis option implements a gamete competition analysis, which is a generalization of the TDT analysis.

MendelGeneDropping.jl

This package performs gene dropping with several useful options for the output.

MendelGeneticCounseling.jl

This analysis option performs risk calculations for genetic counseling problems.

MendelGWAS.jl

This package performs standard Genome-wide Association Studies.

MendelKinship.jl

This analysis option computes kinship and other identity coefficients.

MendelLocationScores.jl

This analysis option maps a trait via the method of Location Scores, i.e., multipoint linkage analysis.

MendelTwoPointLinkage.jl

This analysis option performs two-point linkage analysis.

OpenMendel.github.io

The main website for the OpenMendel project.

RegressionTests

Collection of test cases for OpenMendel framework

Search.jl

Search is a program for function optimization. Search permits bounds and linear constraints to be imposed on parameters and, in statistical applications, computes asymptotic standard errors and correlations of parameter estimates.

SnpArrays.jl

Compressed storage for SNP data

Tutorials

Basic OpenMendel tutorials

VarianceComponentModels.jl

Utilities for fitting and testing variance component models

VCFTools.jl

Utilities for handling VCF files