OpenGene - Open Source Genetics Toolbox

Login: OpenGene

Company: null

Location: null

email:

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Members

1. Lanting Guo
2. Long Zhou
3. Shifu Chen
4. Youcai
5. ???
6. null

Repositories

AfterQC

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

awesome-bio-datasets

awesome-bio-datasets

BamQC

Quality control with BAM files

CfdnaPattern

Pattern Recognition for Cell-free DNA

ctdna-pipeline

A simplified pipeline for ctDNA sequencing data analysis

dedup

Deduplication for cfDNA sequencing data

DeepSomatic

Classify somatic/germline mutations by deep neural networks

defq

Ultra-fast Multi-threaded FASTQ Demultiplexing (in dev)

fastp

A FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...)

FusionDirect.jl

Detect gene fusion directly from raw fastq files

gencore

Generate consensus reads to reduce sequencing noises

GeneFuse

Gene fusion detection and visualization

HTSLIB.jl

HTSLIB.jl is a julia wrapper of htslib for accessing common high-throughput sequencing data file formats such as BAM/SAM files

liquid_biopsy_pocket_book

Liquid biopsy pocket book (in Chinese), written by HaploX engineers.

MrBam

Query Mutated Reads from a Bam

MutScan

Detect and visualize target mutations by scanning FastQ files directly

OpenGene.jl

OpenGene, core libraries for NGS data analysis and bioinformatics in julia

programming

Programming training for bioinformatics and other tasks, with introductions and tutorials.

SeqMaker.jl

Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated

slicer

Slice a text file (like FastQ) to smaller files by lines, with gzip supported