CD2H gitForager

TranSMART Project

Login: transmart

Company: null

Location: null

email: transmart-discuss@googlegroups.com

Blog: http://www.transmartfoundation.org

Members

Repositories

blend4j-plugin: blend4j-plugin is a grails plugin to access galaxy.
dalliance-plugin: null
folder-management-plugin: The transmart (and grails) plugin that contains the folder-management elements.
GWAVA: Genome Wide Association Study Visualizer (from Pfizer)
i2b2_1.6_Postgres: null
IpaApi: null
mydas: mydas is an easy-to-extend Java DAS server framework.
RInterface: A R module with packaged functions to query the tranSMART database directly
Rmodules: A R statistical analysis module plugin for tranSMART
Scripts: A collection of scripts for managing all the tranSMART Foundation repositories
SmartR: SmartR
transmartApp: tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and phenotypic data, and assessing their analytical results in the context of published literature and other work.
transmartApp-Config: external configuration files for tranSMART application
transmartApp-DB: Database schema and database dumps for tranSMART application
transmartAppInstaller: Installation script for transmartApp and i2b2 using GAnt (Ant in Groovy)
transmart-base-ui: Boilerplate code for tranSMART UI
transmart-batch: tranSMART pipeline alternative to ETL, using Spring Batch
transmart-core-api: constraints
transmart-core-db: TranSMART Core
transmart-data: Tools for managing tranSMART's database
transmart-docs: null
tranSMART-ETL: tranSMART ETL pipelines and configurations
transmart-extensions: Elements that are being collected for refactoring but do not yet have a home. This project needs to be reviewed often!
transmart-gwas-plink: Plink integration for tranSMART
transmart-gwas-plugin: The transmart (and grails) plugin that contains the GWAS elements.
transmart-horde: This contains code for a prototype of "federation"
transmart-i2b2-plugin: null
transmart-ICE: ICE tool for transmart ETL (formerly FCL4tranSMART)
transmart-legacy-db: Contains the Grails domain declarations of the legacy transmart schema
transmart-metacore-plugin: The tranSMART plugin Metacore
transmart-mydas: null
transmart-rest-api: HTTP available tranSMART RESTful API
transmart-test: Functional tests for tranSMART
transmart-travis: Helper scripts for travis builds
transmart-unavailable: A Grails app that just displays an "unavailable" message with the tranSMART logo.
transmart-workspace-plugin: The transmart (and Grails) plugin for workspace elements.
transmart-xnat-importer-plugin: null
transmart-xnat-viewer: Connector to link tranSMART to an XNAT server
Util: tranSMART utilities including lucene indexing tool

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.