GATB

Login: GATB

Company: null

Location: France

email:

Blog: http://gatb.inria.fr

Members

1. Charles DELTEL
2. Patrick Durand
3. Rayan Chikhi

Repositories

bcalm

de Bruijn graph compaction in low memory

bloocoo

Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.

DiscoSnp

DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.

dsk

k-mer counting software

gatb-core

Core library of the Genome Analysis Toolbox with de-Bruijn graph

gatb-core-tuto

This project hosts the source code of the GATB-Core Programming Online Tutorial.

gatb-minia-pipeline

GATB Minia assembly pipeline

gatb-tools-machine

Build a single Docker image containing all GATB-Tools ready to be used. This is an official repository, not a mirror.

leon

Leon - FASTA and FASTQ read compressor

MindTheGap

MindTheGap performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome.

minia

Minia is a short-read assembler based on a de Bruijn graph

pyGATB

Python3 wrapper for GATB-Core.

short_read_connector

Short Read Connector (SRC)

simka

Simka is a comparative metagenomics method dedicated to NGS datasets.

TakeABreak

TakeABreak detects inversion breakpoints in read datasets without a reference genome

tigops

Manipulation of unitigs and contigs